BrainHack School Project 2020

Stephanie Alley

PhD student in Biomedical Engineering

Polytechnique Montreal

Background¶

Pre-processing pipeline for prostate mpMRI

What I wanted to learn¶

Nilearn

Git/GitHub

Datalad

Jupyter Notebook

Plotly

Binder

Project¶

Assess effects of processing on age prediction using rs-fMRI¶

Atlas choice
Confound choice
Machine learning (Support Vector Regression)

rs-fMRI processing¶

rs-fMRI processing¶

Atlas choice¶

Confound choice¶

Machine learning: Nilearn¶

Repeated cross-validation¶

In [9]:

Results¶

Takeaways¶

REPRODUCIBILITY IS POSSIBLE!!!
DataLad keeps track of data manipulation
TIER structure for organization
Share code using GitHub
Nilearn for machine learning